Home > Publication Search > Recent Publications

DNA Related Publications (51)

344. C.V. Kumar, Barton, J.K. , and N.J. Turro, "Photophysics of Ruthenium Complexes Bound to Double Helical DNA", J. Am. Chem. Soc., 107, 5518 (1985). PDF

359. J.K. Barton, J.M. Goldberg, C.V. Kumar, and N.J. Turro, "Binding Modes and Base Specificity of Tris(phenanthroline)-ruthenium(II) Enantiomers with Nucleic Acids: Tuning the Stereoselectivity", J. Am. Chem. Soc., 108, 2081 (1986). PDF

370. M. Fleisher, K. C. Waterman, N.J. Turro and J.K. Barton, "Light-Induced Cleavage of DNA by Metal Complexes", Inorganic Chemistry, 25, 3549 (1986). PDF

371. J.K.Barton, C.V. Kumar, and N.J. Turro, "DNA-Mediated Photoelectron Transfer Reactions", J. Am. Chem. Soc., 108, 6391 (1986). PDF

428. M.D. Purugganan, C.V. Kumar, N.J. Turro and J.K. Barton, "Accelerated Electron Transfer Between Metal Complexes Mediated by DNA", Science, 241, 1645 (1988). PDF

434. A.M. Pyle, J.P. Rehmann, R. Meshoyrer, C.V. Kumar, N.J. Turro and J.K. Barton, "Mixed-Ligand Complexes of Ruthenium(II): Factors Governing Binding to DNA", J. Am. Chem. Soc., 111, 3051 (1989). PDF

465. A.E. Friedman, J.-C. Chambron, J.-P. Sauvage, N.J. Turro and J.K. Barton, "Molecular 'Light Switch' for DNA: Ru(bpy)2(dppz)2+", J. Am. Chem. Soc., 112, 4960 (1990). PDF

467. A. Kirsch-DeMesmaeker, G. Orellana, J.K. Barton and N.J. Turro, "Ligand-Dependent Interaction of Ruthenium(II)polypyridyl Complexes with DNA Probed by Emission Spectroscopy", Photochem. Photobiol, 52, 461 (1990).

478. G.D. Jaycox, A.E. Friedman, N.J. Turro and J.K. Barton, "Octahedral Ru(II) Complexes Containing the Dipyridophenazine Ring System: Novel Fluorescent Probes for Nucleic Acid Structure", Polym. Preprints, 32, 634 (1991).

484. A.E. Friedman, C.V. Kumar, N.J. Turro and J.K. Barton, "Luminescence of Ruthenium(II) Polypyridyls: Evidence for Intercalative Binding to Z-DNA", Nucl. Acids Res., 19, 2595 (1991). PDF

492. G. Orellana, A.Kirsch-De Mesmaeker, J.K. Barton and N.J. Turro, "Photoinduced Electron Transfer Quenching of Excited Ru(II) Polypyridyls Bound to DNA: The Role of the Nucleic Acid Double Helix", Photochem. & Photobio., 54, 499 (1991). PDF

495. H.H. Thorp, N.J. Turro and H.B. Gray, "Photochemistry of Dioxorhenium(V) Complexes in the Presence of DNA: Multiple Binding Regions and Oxidative Cleavage", New J. Chem., 15, 601 (1991).

500. N.J. Turro, J.K. Barton and D.A. Tomalia, "Molecular Recognition and Chemistry in Restricted Reaction Spaces. Photophysics and Photoinduced Electron Transfer on the Surfaces of Micelles, Polyelectrolytes, Dendrimers and DNA", Acc. Chem. Res., 24, 332 (1991). PDF

520. M.F. Ottaviani, N.D. Ghatlia, S.H. Bo§mann, J.K. Barton, H. Durr and N.J. Turro, "Nitroxide-Lebeled Ru(II)-Polypyridyl Complexes as EPR Probes to Study Organized Systems. 2. Combined Photophysical and EPR Investigations of B-DNA", J. Am. Chem. Soc., 114, 8946 (1992). PDF

524. Y. Jenkins, A.E. Friedman, N.J. Turro and J.K. Barton, "Characterization of Dipyridophneazine Complexes of Ruthenium(II): The Light Switch Effect as a Function of Nucleic Acid Sequence and Conformation", Biochemistry, 31, 10809 (1992). PDF

544. C.J. Murphy, M.R. Arkin, Y. Jenkins, N.D. Ghatlia, S.H. Bobmann, N.J. Turro and J.K. Barton, "Long-Range Photoinduced Electron Transfer Through a DNA Helix", Science, 262, 1025 (1993). PDF

559. C.J. Murphy, M.R. Arkin, N.D. Ghatlia, S. Bo§mann, N.J. Turro and J. K. Barton, "Fast Photoinduced Electron Transfer through DNA Intercalation", Proc. Natl. Acad. Sci. USA, 91, 5315 (1994).

567. N.J. Turro, "Supramolecular Organic and Inorganic Photochemistry: Radical Pair Recombination in Micelles, Electron Transfer on Starburst Dendrimers, and the Use of DNA as a Molecular Wire", Pure & Appl. Chem., 67, 199 (1995).

577. L.S. Schulman, S.H. Bo§mann, and N.J. Turro, "Analysis of Luminescence Quenching on Calf Thymus DNA", J. Phys. Chem., 99, 9283 (1995). PDF

579. C. Turro, S.H. Bo§mann, Y. Jenkins, J.K. Barton, and N.J. Turro, "Proton Transfer Quenching of the MLCT Excited State of Ru(pehn)2dppz2+ in Homogeneous Solution and Bound to DNA", J. Am. Chem. Soc., 117, 9026 (1995). PDF

582. M.R. Arkin, Y. Jenkins, C.J. Murphy, N.J. Turro, and J.K. Barton, "Metallocalators as Probes of the DNA -[pi]-way", in Mechanistic Bioinorganic Chemistry, eds. H.H. Thorp and V.L. Pecoraro, ACS Adv. in Chem. Series, No. 246, Washington, D.C., p. 449 (1995).

592. M.R. Arkin, E.D.A. Stemp, C. Turro, N.J. Turro, and J.K. Barton, "Luminescence Quenching in Supramolecular Systems: A Comparison of DNA- and SDS Micelle-Mediated Photoinduced Electron Transfer between Metal Complexes", J.Am. Chem. Soc., 118, 2267 (1996). PDF

619. W. Chen, C. Turro, L.A. Friedman, J.K. Barton, and N.J. Turro, "Resonance Raman Investigation of Ru(phen)2(dppz)2+ and Related Complexes in Water and in the Presence of DNA", J. Phys. Chem. B, 101, 6995 (1997). PDF

633. C. Turro, D.B. Hall, W. Chen, H. Zuilhof, J.K. Barton, and N.J. Turro, "Solution Photoreactivity of Phenanthrenequinone Diimine Complexes of Rhodium and Correlations with DNA Photocleavage and Photooxidation", J. Phys. Chem. A, 102, 5708-5715 (1998). PDF

635. W. Chen, C. Turro, L.A. Friedman, J.K. Barton, and N.J. Turro, "Reply to the Comment on 'Resonance Raman Investigation of Ru(phen)2dppz2+ and Related Complexes in Water and in the Presence of DNA", J. Phys. Chem.B, 102, 6303 (1998). PDF

658. Wei Chen, N.J. Turro, and D.A. Tomalia, "Using Ethidium Bromide to Probe the Interaction between DNA and Dendrimers", Langmuir, 16, 15-19 (2000). PDF

668. O. Schiemann, N.J. Turro and J.K. Barton, "EPR Detection of Guanine Radicals in a DNA Duplex under Biological Conditions: Selective Base Oxidation by Ru(phen)2dppz3+ Using the Flash-Quench Technique", J. Phys. Chem. B, 104, 7214-7220 (2000). PDF

673. M.F. Ottaviani, F. Furini, A. Casini, N.J. Turro, S. Jockusch, D.A. Tomalia, and L. Messori, "Formation of Supramolecular Structures between DNA and Starburst Dendrimers Studied by EPR, CD, UV, and Melting Profiles", Macromolecules, 33, 7842-7851 (2000). PDF

695. A. K. Tong, S. Jockusch, Z. Li, H.-R. Zhu, D.L. Akins, N.J. Turro and J. Ju, "Triple Fluorescence Energy Transfer in Covalently Tri-Chromophore-Labeled DNA", J. Am. Chem. Soc., 123, 12923-12924 (2001). PDF

705. N.J. Turro, "Damage Control of DNA in Nucleosome-Core Particles: When a Histone's Loving, Protective Embrace Is Just Not Good Enough", Chem. & Biol., 9, 399 (2002). PDF

722. Xiaopeng Bai, Zengmin Li, Steffen Jockusch, Nicholas J. Turro, and Jingyue Ju, "Photocleavage of a 2-nitrobenzyl linker bridging a fluorophore to the 5's end of DNA", PNAS, BIOPHYSICS CHEMISTRY, 100, 409-413 (2002). PDF

723. Zengmin Li, Xiaopeng Bai, Hameer Ruparel, Sobin Kim, Nicholas J. Turro, and Jingyue Ju, "A photocleavable fluorescent nucleotide for DNA sequencing and analysis", PNAS, 100, 414-419 (2002). PDF

745. Xiaopeng Bai, Sobin Kim, Zengmin Li, Nicholas J. Turro and Jingyue Ju, "Design and synthesis of a photocleavable biotinylated nucleotide for DNA analysis by mass spectrometry", Nucleic Acids Research, 32, 535-541 (2004). PDF

750. Tae Seok Seo, Xiaopeng Bai, Hameer Ruparel, Zengmin Li, Nicholas J. Turro, and Jingyue Ju, "Photocleavable fluorescent nucleotides for DNA sequencing on a chip constructed by site-specific coupling chemistry", Proceedings of the National Academy of Science, 101, 5488-5493 (2004). PDF

764. Steffen Jockusch, Zengmin Li, Jingyue Ju, and Nicholas J. Turro, "Two-photon Excitation Induced Fluorescence of a Trifluorophore-labeled DNA", Photochemistry and Photobiology, 81, 238-241 (2005). PDF

767. Tae Seok Seo, Xiaopeng Bai, Dae Hyun Kim, Qinglin Meng, Shundi Shi, Hameer Ruparel, Zengmin Li, Nicholas J. Turro and Jingyue Ju, "Four-color DNA sequencing by synthesis on a chip using photocleavable fluorescent nucleotides", Proceedings of the National Academy of Science, 102, 5926-5931 (2005). PDF

768. Hameer Ruparel, Lanrong Bi, Zengmin Li, Xiaopeng Bai, Dae Hyun Kim, Nicholas J. Turro, and Jingyue Ju, "Design and synthesis of a 3'-O-allyl photocleavable fluorescent nucleotide as a reversible terminator for DNA sequencing by synthesis", Proceedings of the National Academy of Science, 102, 5932-5937 (2005). PDF

787. Steffen Jockusch, Angel A. Marti, Nicholas J. Turro, Zengmin Li, Xiaoxu Li, Jingyue Ju, Nathan Stevens and Daniel L. Akins, "Spectroscopic investigation of a FRET molecular beacon containing two fluorophores for probing DNA/RNA sequences", Photochem. Photobiol. Sci., 5, 493-498 (2006). PDF

788. Angel A. Marti, Steffen Jockusch, Zengmin Li, Jingyue Ju, and Nicholas J. Turro, "Molecular beacons with intrinsically fluorescent nucleotides", Nucleic Acids Res., 34 No. 6, e50 (2006). PDF

789. Qinglin Meng, Dae Hyun Kim, Xiaopeng Bai, Lanrong Bi, Nicholas J. Turro, and Jingyue Ju, "Design and Synthesis of a Photocleavable Fluorescent Nucleotide 3'-O-Allyl-dGTP-PC-Bodipy-FL-510 as a Reversible Terminator for DNA Sequencing by Synthesis", J. Org. Chem., 71, 3248-3252 (2006). PDF

799. Xiaoxu Li, Zengmin Li, Angel A. Marti, Steffen Jockusch, Nathan Stevens, Daniel L. Akins, Nicholas J. Turro and Jingyue Ju, "Combinatorial fluorescence energy transfer molecular beacons for probing nucleic acid sequences", Photochem. Photobiol. Sci., 5, 896-902 (2006). PDF

804. Angel A. Marti, Xiaoxu Li, Steffen Jockusch1, Zengmin Li, Bindu Raveendra, Sergey Kalachikov, James J. Russo, Irina Morozova, Sathyanarayanan V. Puthanveettil, Jingyue Ju, and Nicholas J. Turro, "Pyrene binary probes for unambiguous detection of mRNA using time-resolved fluorescence spectroscopy", Nucl. Acids Res., 34, 3161-3168 (2006). PDF

807. Jingyue Ju, Dae Hyun Kim, Lanrong Bi, Qinglin Meng, Xiaopeng Bai, Zengmin Li, Xiaoxu Li, Mong Sano Marma, Shundi Shi, Jian Wu, John R. Edwards, Aireen Romu, Nicholas J. Turro, "Four-color DNA sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators", Proceedings of the National Academy of Science, 103, 19635-19640 (2006). PDF

812. Angel A. Marti, Xiaoxu Li,Steffen Jockusch, Nathan Stevens, Zengmin Li, Bindu Raveendra, Sergey Kalachikov, Irina Morozova, James J. Russo, Daniel L. Akins, Jingyue Ju, and Nicholas J. Turro, "Design and characterization of two-dye and three-dye binary fluorescent probes for mRNA detection", Tetrahedron, 63, 3591-3600 (2007). PDF

819. Angel A. Marti, Steffen Jockusch, Nathan Stevens, Jingyue Ju, and Nicholas J. Turro, "Fluorescent Hybridization Probes for Sensitive and Selective DNA and RNA Detection", Acc. Chem. Res., 40, 402-409 (2007). PDF

827. Angel A. Marti, Cindy A. Puckett, Joanne Dyer, Nathan Stevens, Steffen Jockusch, Jingyue Ju, Jacqueline K. Barton, and Nicholas J. Turro, "Inorganic-Organic Hybrid Luminescent Binary Probe for DNA Detection Based on Spin-Forbidden Resonance Energy Transfer", J. AM. CHEM. SOC., 129, 8680-8681 (2007). PDF

834. Jian Wu, Shenglong Zhang, Qinglin Meng, Huanyan Cao, Zengmin Li, Xiaoxu Li, Shundi Shi, Dae Hyun Kim, Lanrong Bi, Nicholas J. Turro, and Jingyue Ju, "3'-O-modified nucleotides as reversible terminators for pyrosequencing", Proc. Natl. Acad. Sci., 104, 16462-16467 (2007). PDF

882. N. A. O'Connor, N. Stevens, Diana Samaroo, M. R. Solomon, A. A Marti, J. Dyer, H. Vishwasrao, D. Akins, E. R. Kandel, and N.J. Turro, "A Covalently Linked Phenanthridine-Ruthenium(II) Complex as a RNA Probe", Chem. Commun., , 2640-2642 (2009). PDF

887. Ingrid M. van der Wiel, Jenny Cheng, Roger Koukiekolo, Rodney K. Lyn, Nathan Stevens, Naphtali O'Connor, Nicholas J. Turro, and John Paul Pezacki, "FLEth RNA Intercalating Probe Is a Convenient Reporter for Small Interfering RNAs", J. AM. CHEM. SOC., 131, 9872-9873 (2009). PDF

902. Angel A. Marti, Nicholas J. Turro, "Fluorescent Responsive Probes for Oligonucleotide Detection", Chemical Evolution II: From the Origins of Life to Modern Society, eds. L. Zaikowski, J. M. Friedrich, S. R. Seidel, Washington, D.C.: American Chemical Society, 269-282 (2009). PDF

991. Benjamin Doughty, Yi Rao, Samuel W. Kazer, Sheldon J. J. Kwok, Nicholas J. Turro, and Kenneth B. Eisenthal, "Binding of the Anti-Cancer Drug Daunomycin to DNA Probed by Second Harmonic Generation", J. Phys. Chem. B, 117, 15285-15289 (2013). PDF